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Medical Diagnosis

Industry Department Role
Health Care Health Business Executive/Physician
Data

Breast Cancer Wisconsin (Diagnostic) Data Set. From the given information of the breast cancer dataset, classify whether it is a malignant cancer or benign cancer.

Click to expand Features Informations: 1. idI D number 2. diagnosis The diagnosis of breast tissues (M = malignant, B = benign) 3. radius_mean mean of distances from center to points on the perimeter 4. texture_means tandard deviation of gray-scale values 5. perimeter_mean mean size of the core tumor 6. area_mean 7. smoothness_mean mean of local variation in radius lengths 8. compactness_mean mean of perimeter^2 / area - 1.0 9. concavity_mean mean of severity of concave portions of the contour 10. concave points_mean mean for number of concave portions of the contour 11. symmetry_mean 12. fractal_dimension_mean mean for "coastline approximation" - 1 13. radius_sestandard error for the mean of distances from center to points on the perimeter 14. texture_sestandard error for standard deviation of gray-scale values 15. perimeter_se 16. area_se 17. smoothness_sestandard error for local variation in radius lengths 18. compactness_sestandard error for perimeter^2 / area - 1.0 19. concavity_sestandard error for severity of concave portions of the contour concave points_sestandard error for number of concave portions of the contour 20. symmetry_se 21. fractal_dimension_sestandard error for "coastline approximation" - 1 22. radius_worst"worst" or largest mean value for mean of distances from center to points on the perimeter 23. texture_worst"worst" or largest mean value for standard deviation of gray-scale values 24. perimeter_worst 25. area_worst 26. smoothness_worst "worst" or largest mean value for local variation in radius lengths 27. compactness_worst "worst" or largest mean value for perimeter^2 / area - 1.0 28. concavity_worst "worst" or largest mean value for severity of 29. 29. concave portions of the contour 30. concave points_worst "worst" or largest mean value for number of concave portions of the contour 31. symmetry_worst 32. fractal_dimension_worst"worst" or largest mean value for "coastline approximation" - 1

MindsDB Code example

import mindsdb
import sys
import pandas as pd
from sklearn.metrics import balanced_accuracy_score


def run(sample):
    mdb = mindsdb.Predictor(name='cancer_model')

    mdb.learn(from_data='processed_data/train.csv', to_predict='diagnosis')

    test_df = pd.read_csv('processed_data/test.csv')
    predictions = mdb.predict(when_data='processed_data/test.csv')

    results = [str(x['diagnosis']) for x in predictions]
    real = list(map(str,list(test_df['diagnosis'])))

    accuracy = balanced_accuracy_score(real, results)

    return {
        'accuracy': accuracy
        ,'accuracy_function': 'balanced_accuracy_score'
        ,'backend': backend
    }

if __name__ == '__main__':
    sample = bool(sys.argv[1]) if len(sys.argv) > 1 else False
    result = run(sample)
    print(result)

Mindsdb accuracy

Accuraccy Backend Last run MindsDB Version Latest Version
0.9666666666666667 Lightwood 17 April 2020 MindsDB PyPi Version
Click to expand MindsDB's explanation for test rows:
{
    'accuracy': 0.9666666666666667,
    'accuracy_function': 'balanced_accuracy_score',
    'backend': 'lightwood',
    'additional_info': [{
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.775,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7335,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6401,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.4522,
            'explanation': {
                'prediction_quality': 'somewhat confident',
                'important_missing_information': []
            },
            'prediction_quality': 'somewhat confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.2977,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7696,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3101,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3506,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.318,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6602,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7002,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.4436,
            'explanation': {
                'prediction_quality': 'somewhat confident',
                'important_missing_information': []
            },
            'prediction_quality': 'somewhat confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.2651,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.3924,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6821,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7553,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.354,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3222,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.896,
            'explanation': {
                'prediction_quality': 'very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6895,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.755,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.8636,
            'explanation': {
                'prediction_quality': 'very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3326,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6485,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.3136,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3354,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.6505,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.679,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7148,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6593,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6894,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7185,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7253,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6901,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.4252,
            'explanation': {
                'prediction_quality': 'somewhat confident',
                'important_missing_information': []
            },
            'prediction_quality': 'somewhat confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3221,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7813,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.8737,
            'explanation': {
                'prediction_quality': 'very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.8305,
            'explanation': {
                'prediction_quality': 'very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.6851,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.701,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6864,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.2707,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.3537,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.3199,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7504,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6575,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.2759,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3535,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.696,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6745,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.3157,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6887,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.661,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.8222,
            'explanation': {
                'prediction_quality': 'very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6957,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.6465,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.3309,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.2853,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7294,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7076,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.6807,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3208,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3083,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7044,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3186,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7204,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.6993,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '0',
            'confidence': 0.7897,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.7341,
            'explanation': {
                'prediction_quality': 'confident',
                'important_missing_information': []
            },
            'prediction_quality': 'confident',
            'important_missing_information': []
        }
    }, {
        'diagnosis': {
            'predicted_value': '1',
            'confidence': 0.3275,
            'explanation': {
                'prediction_quality': 'not very confident',
                'important_missing_information': []
            },
            'prediction_quality': 'not very confident',
            'important_missing_information': []
        }
    }, {
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